| distance | reference number | name | latitude | longitude |
| 25.0 | 2965 | Stockton, California | 37.9583 | -121.29 |
| 30.5 | 1139 | Grant Line Canal (drawbridge), Old River, Californi | 37.8167 | -121.45 |
| 31.7 | 1304 | Holt, Whiskey Slough, San Joaquin River, California | 37.9333 | -121.433 |
| 32.8 | 272 | Blackslough Landing, San Joaquin River, California | 37.995 | -121.422 |
| 33.9 | 306 | Borden Highway Bridge, Middle River, San Joaquin Ri | 37.8917 | -121.488 |
| 34.2 | 263 | Bishop Cut, Disappointment Slough, San Joaquin Rive | 38.0433 | -121.418 |
| 38.4 | 3261 | Wards Island, Little Connection Slough, San Joaquin | 38.05 | -121.497 |
| 38.6 | 307 | Borden Highway Bridge, Old River, San Joaquin River | 37.89 | -121.57 |
| 39.2 | 2143 | Orwood, Old River, San Joaquin River, California | 37.9333 | -121.567 |
| 40.4 | 3059 | Terminous, South Fork, Mokelumne River, California | 38.11 | -121.498 |
| 41.6 | 2449 | Prisoners Point, San Joaquin River, California | 38.0667 | -121.55 |
| 42.4 | 1390 | Irish Landing, Sand Mound Slough, San Joaquin River | 38.0333 | -121.583 |
| 44.5 | 1976 | New Hope Bridge, Mokelumne River, California | 38.2333 | -121.483 |
| 45.0 | 1098 | Georgiana Slough entrance, Mokelumne River, Califor | 38.1267 | -121.578 |
| 46.5 | 2836 | Snodgrass Slough, Sacramento River, California | 38.275 | -121.487 |
| 46.9 | 963 | False River, San Joaquin River, California | 38.055 | -121.655 |
| 49.1 | 3087 | Threemile Slough Entrance, San Joaquin River, Calif | 38.0833 | -121.683 |
| 49.2 | 2953 | Steamboat Slough, Snug Harbor Marina, Sacramento Ri | 38.2 | -121.612 |
| 50.7 | 3088 | Threemile Slough, Sacramento River, California | 38.1067 | -121.7 |
| 51.3 | 2547 | Rio Vista, Sacramento River, California | 38.1467 | -121.69 |
| 54.1 | 581 | Clarksburg, Sacramento River, California | 38.4167 | -121.517 |
| 54.9 | 80 | Antioch, San Joaquin River, California | 38.02 | -121.815 |
| 57.9 | 613 | Collinsville, Sacramento River, California | 38.0733 | -121.848 |
| 58.9 | 2273 | Pittsburg, New York Slough, Suisun Bay, California | 38.035 | -121.88 |
| 60.1 | 1882 | Montezuma Slough, Suisun Bay, California | 38.0767 | -121.885 |