| distance | reference number | name | latitude | longitude |
| 3.4 | 671 | Coyote Hills Slough entrance, San Francisco Bay, Ca | 37.5633 | -122.128 |
| 4.0 | 23 | Alameda Creek, San Francisco Bay, California | 37.595 | -122.145 |
| 4.4 | 1986 | Newark Slough, San Francisco Bay, California | 37.5167 | -122.083 |
| 5.5 | 826 | Dumbarton Bridge, California | 37.5067 | -122.115 |
| 5.5 | 827 | Dumbarton Bridge, San Francisco Bay, California | 37.5067 | -122.115 |
| 5.8 | 2856 | South Bay Wreck, San Francisco Bay, California | 37.55 | -122.167 |
| 6.0 | 1905 | Mowry Slough, San Francisco Bay, California | 37.5 | -122.033 |
| 6.3 | 2655 | San Mateo Bridge (east end), San Francisco Bay, Cal | 37.6 | -122.183 |
| 7.4 | 397 | Calaveras Point, west of, San Francisco Bay, Califo | 37.4667 | -122.067 |
| 7.7 | 2523 | Redwood Creek, C.M. No. 8, San Francisco Bay, Calif | 37.5333 | -122.193 |
| 8.1 | 2179 | Palo Alto Yacht Harbor, California | 37.4583 | -122.105 |
| 8.1 | 2524 | Redwood Creek, Marker 8, California | 37.5333 | -122.2 |
| 8.2 | 668 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.465 | -122.023 |
| 8.3 | 669 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.4633 | -122.023 |
| 8.5 | 3302 | West Point Slough, San Francisco Bay, California | 37.505 | -122.192 |
| 8.5 | 2522 | Redwood Creek entrance (inside), San Francisco Bay, | 37.5167 | -122.2 |
| 8.6 | 2560 | Roberts Landing, 1.3 miles west of, San Francisco B | 37.6667 | -122.2 |
| 9.0 | 182 | Bay Slough, east end, San Francisco Bay, California | 37.545 | -122.222 |
| 9.3 | 2651 | San Leandro Marina, San Francisco Bay, California | 37.695 | -122.192 |
| 9.3 | 2652 | San Leandro Marina, San Francisco Bay, California ( | 37.695 | -122.192 |
| 9.4 | 2520 | Redwood City, Wharf 5, California | 37.5067 | -122.21 |
| 9.4 | 2521 | Redwood City, Wharf 5, San Francisco Bay, Californi | 37.5067 | -122.21 |
| 9.9 | 1138 | Granite Rock, Redwood Creek, San Francisco Bay, Cal | 37.495 | -122.213 |
| 9.9 | 643 | Corkscrew Slough, San Francisco Bay, California | 37.5 | -122.217 |
| 10.2 | 183 | Bay Slough, west end, San Francisco Bay, California | 37.5517 | -122.243 |